Publications

If it ain’t broke, don’t fix it: evaluating the effect of increased recombination on response to selection for wheat breeding

Ella Taagen, Katherine Jordan, Eduard Akhunov, Mark E. Sorrells & Jean-Luc Jannink

G3 Genes/Genomes/Genetics | 11.04.2022

Population genomics of Puccinia graminis f.sp. tritici highlights the role of admixture in the origin of virulent wheat rust races

Yuanwen Guo, Bliss Betzen, Andres Salcedo, Fei He, Robert L. Bowden, John P. Fellers, Katherine W. Jordan, Alina Akhunova, Mathew N. Rouse, Les J. Szabo & Eduard Akhunov

Nature Communications | 10.21.2022

Multiplexed promoter and gene editing in wheat using a virus-based guide RNA delivery system

Wei Wang, Zitong Yu, Fei He, Guihua Bai, Harold N. Trick, Alina Akhunova & Eduard Akhunov

Plant Biotechnology Journal | 08.16.2022

GWAS for stripe rust resistance in wild emmer wheat (Triticum dicoccoides) population: Obstacles and solutions

May Tene, Elina Adhikari, Nicolas Cobo, Katherine W. Jordan, Oadi Matny, Isabel A. del Blanco, Jonathan Roter, Smadar Ezrati, Liubov Govta, Jacob Manisterski, Pnina B. Yehuda, Xianming Chen, Brian Steffenson, Eduard Akhunov & Hanan Sela

Crops | 03.02.2022

Genomic variants affecting homoeologous gene expression dosage contribute to agronomic trait variation in allopolyploid wheat

Fei He, Wei Wang, William B. Rutter, Katherine W. Jordan, Jie Ren, Ellie Taagen, Noah DeWitt, Deepmala Sehgal, Sivakumar Sukumaran, Susanne Dreisigacker, Matthew Reynolds, Jyotirmoy Halder, Sunish Kumar Sehgal, Shuyu Liu, Jianli Chen, Allan Fritz, Jason Cook, Gina Brown-Guedira, Mike Pumphrey, Arron Carter, Mark Sorrells, Jorge Dubcovsky, Matthew J. Hayden, Alina Akhunova, Peter L. Morrell, Les Szabo, Matthew Rouse & Eduard Akhunov

Nature Communications | 02.11.2022

Genetic characterization and curation of diploid A-genome wheat species

Laxman Adhikari, John Raupp, Shuangye Wu, Duane Wilson, Byron Evers, Dal-Hoe Koo, Narinder Singh, Bernd Friebe & Jesse Poland

Plant Physiology | 02.03.2022

Identification and characterization of a natural polymorphism in FT-A2 associated with increased number of grains per spike in wheat

Priscilla Glenn, Junli Zhang, Gina Brown-Guedira, Noah G. DeWitt, Jason P. Cook, Kun Li, Eduard Akhunov & Jorge Dubcovsky

Theoretical and Applied Genetics | 11.26.2021

Development of the wheat practical haplotype graph database as a resource for genotyping data storage and genotype imputation

Katherine W. Jordan, Peter J. Bradbury, Zachary R. Miller, Moses Nyine, Fei He, Max Fraser, Jim Anderson, Esten Mason, Andrew Katz, Stephen Pearce, Arron H. Carter, Samuel Prather, Michael Pumphrey, Jianli Chen, Jason Cook, Shuyu Liu, Jackie C. Rudd, Zhen Wang, Chenggen Chu, Amir M. H. Ibrahim, Jonathan Turkus, Eric Olson, Ragupathi Nagarajan, Brett Carver, Liuling Yan, Ellie Taagen, Mark Sorrells, Brian Ward, Jie Ren, Alina Akhunova, Guihua Bai, Robert Bowden, Jason Fiedler, Justin Faris, Jorge Dubcovsky, Mary Guttieri, Gina Brown-Guedira, Ed Buckler, Jean-Luc Jannink & Eduard D. Akhunov

G3 Genes/Genomes/Genetics | 11.09.2021

The haplotype-based analysis of Aegilops tauschii introgression into hard red winter wheat and its impact on productivity traits

Moses Nyine, Elina Adhikari, Marshall Clinesmith, Robert Aiken, Bliss Betzen, Wei Wang, Dwight Davidson, Zitong Yu, Yuanwen Guo, Fei He, Alina Akhunova, Katherine W. Jordan, Allan K. Fritz & Eduard Akhunov

Frontier Plant Science | 08.17.2021

Expanding the range of editable targets in the wheat genome using the variants of the Cas12a and Cas9 nucleases

Wei Wang, Bin Tian, Qianli Pan, Yueying Chen, Fei He, Guihua Bai, Alina Akhunova, Harold N. Trick & Eduard Akhunov

Plant Biotechnology Journal | 07.28.2021

Development of DNA markers from physically mapped loci in Aegilops comosa and Aegilops umbellulata using single-gene FISH and chromosome sequence

Mahmoud Said, Katerina Holušová, András Farkas, László Ivanizs, Eszter Gaál, Petr Cápal, Michael Abrouk, Mihaela M. Martis-Thiele, Balázs Kalapos, Jan Bartoš, Bernd Friebe, Jaroslav Doležel & István Molnár

Frontiers in Plant Science | 06.15.2021

An approach for high‐resolution genetic mapping of distant wild relatives of bread wheat: example of fine mapping of Lr57 and Yr40 genes

James Steadham, Taylor Schulden, Bhanu Kalia, Dal-Hoe Koo, Bikram S. Gill, Robert Bowden, Inderjit S. Yadav, Parveen Chhuneja, John Erwin, Vijay Tiwari & Nidhi Rawat

Theoretical and Applied Genetics | 05.19.2021

QTL mapping for grain yield and three yield components in a population derived from two high-yielding spring wheat cultivars

Kyle Isham, Rui Wang, Weidong Zhao, Justin Wheeler, Natalie Klassen, Eduard Akhunov & Jianli Chen

Theoretical and Applied Genetics | 03.09.2021

The Aegilops ventricosa 2NvS segment in bread wheat: cytology, genomics and breeding

Liangliang Gao, Dal-Hoe Koo, Philomin Juliana, Trevor Rife, Daljit Singh, Cristiano L. da Silva, Thomas Lux, Kevin M. Dorn, Marshall Clinesmith, Paula Silva, Xu Wang, Manuel Spannagl, Cecile Monat, Bernd Friebe, Burkhard Steuernagel, Gary J. Muelbauer, Sean Walkowiak, Curtis Pozniak, Ravi Singh, Nils Stein, Martin Mascher, Allan Fritz & Jesse Poland

Theoretical and Applied Genetics | 11.12.2020

Homoeologous recombination: A novel and efficient system for broadening the genetic variability in wheat

Dal-Hoe Koo, Bernd Friebe & Bikram S. Gill

Agronomy | 07.22.2020

Development and molecular cytogenetic characterization of cold-hardy perennial wheatgrass adapted to northeastern China

Wei Yan, Xin Jin, Bo Jiang, Xiaoyue Qi, Yaxin Chen, Xinling Li, Xiaoqiang Liu, Yongkang Ren, Lei Cui, Qingjie Song, Hongjie Li, Bernd Friebe, Jilin Li & Yanming Zhang

Frontier Plant Science Section Plant Breeding | 05.14.2020

Registration of Hessian fly‐resistant germplasm KS18WGRC65 carrying H26 in hard red winter wheat ‘Overley’ background

Narinder Singh, Ryan Steeves, Ming-Shun Chen, Mustapha El Bouhssini, Michael Pumphrey & Jesse Poland

Journal of Plant Registrations | 04.07.2020

In-silico detection of aneuploidy and chromosomal deletions in wheat using genotyping-by-sequencing

Narinder Singh, John Raupp, Dal-Hoe Koo, Bernd Friebe, Bikram Gill & Jesse Poland

Plant Methods | 04.06.2020

Genome-wide impacts of alien chromatin introgression on wheat transcriptions

Zhenjie Dong, Chao Ma, Xiubin Tian, Changtao Zhu, Gang Wang, Yuanfeng Lv, Bernd Friebe, Huanhuan Li & Wenxuan Liu

Scientific Reports | 03.16.2020

A spontaneous wheat-Aegilops longissima translocation carrying Pm66 confers resistance to powdery mildew

Huanhuan Li, Zhenjie Dong, Chao Ma, Qing Xia, Xiubin Tian, Sunish Sehgal, Dal-Hoe Koo, Bernd Friebe, Pengtao Ma & Wenxuan Liu

Theoretical and Applied Genetics | 01.13.2020

Physical mapping of Pm57, a powdery mildew resistance gene derived from Aegilops searsii

Zhenjie Dong, Xiubin Tian, Chao Ma, Qing Xia, Beilin Wang, Qifan Chen, Sunish K. Sehgal, Bernd Friebe, Huanhuan Li & Wenxuan Liu

International Journal of Molecular Science | 01.03.2020

Physical mapping of stem rust resistance gene Sr52 from Dasypyrum villosum based on ph1b-induced homoeologous recombination

Huanhuan Li, Zhenjie Dong, Chao Ma, Xiubin Tian, Zengjun Qi, Nan Wu, Bernd Friebe, Zhiguo Xiang, Qing Xia, Wenxuan Liu & Tianya Li

International Journal of Molecular Sciences | 10.02.2019

Production of a complete set of wheat-barley group-7 chromosome recombinants with increased β-glucan content

Tatiana V. Danilova, Jesse Poland & Bernd Friebe

Theoretical and Applied Genetics | 09.18.2019

Introgression of a novel Ug99-effective stem rust resistance gene into wheat and development of Dasypyrum villosum chromosome-specific markers via genotyping-by-sequencing (GBS)

Kaori Ando, Vandhana Krishnan, Sheri Rynearson, Matthew N. Rouse, Tatiana Danilova, Bernd Friebe, Deven See & Michael O. Pumphrey

Plant Disease | 05.07.2019

Resistance gene cloning from a wild crop relative by sequence capture and association genetics

Sanu Arora, Burkhard Steuernagel, Kumar Gaurav, Sutha Chandramohan, Yunming Long, Oadi Matny, Ryan Johnson, Jacob Enk, Sambasivam Periyannan, Narinder Singh, M. Asyraf Md Hatta, Naveenkumar Athiyannan, Jitender Cheema, Guotai Yu, Ngonidzashe Kangara, Sreya Ghosh, Les J. Szabo, Jesse Poland, Harbans Bariana, Jonathan D. G. Jones, Alison R. Bentley, Mick Ayliffe, Eric Olson, Steven S. Xu, Brian J. Steffenson, Evans Lagudah & Brande B. H. Wulff

Nature Biotechnology | 02.04.2019

Genomic analysis confirms population structure and identifies inter-lineage hybrids in Aegilops tauschii

Narinder Singh, Shuangye Wu, Vijay Tiwari, Sunish Sehgal, John Raupp, Duane Wilson, Mehraj Abbasov, Bikram Gill & Jesse Poland

Frontiers in Plant Science | 01.25.2019

Efficient curation of genebanks using next generation sequencing reveals substantial duplication of germplasm accessions

Narinder Singh, Shuangye Wu, W. John Raupp, Sunish Sehgal, Sanu Arora, Vijay Tiwari, Prashant Vikram, Sukhwinder Singh, Parveen Chhuneja, Bikram S. Gill & Jesse Poland

Scientific Reports | 01.24.2019

The Agropyron cristatum karyotype, chromosome structure and cross-genome homoeology as revealed by fluorescence in situ hybridization with tandem repeats and wheat single-gene probes.

Mahmoud Said, Eva Hřibová, Tatiana V. Danilova, Miroslava Karafiátová, Jana Čížková, Bernd Friebe, Jaroslav Doležel, Bikram S. Gill & Jan Vrán

Theoretical and Applied Genetics | 08.01.2018

Evaluating heat tolerance of a complete set of wheat- Aegilops geniculata chromosome addition lines

Andrew Green, Bernd Friebe, P. V. Vara Prasad & Allan Fritz

Journal of Agronomy and Crop Science | 04.19.2018

Chromosome Rearrangements Caused by Double Monosomy in Wheat-Barley Group-7 Substitution Lines

Tatiana V. Danilova, Bernd Friebe, Bikram S. Gill, Jesse Poland & Eric Jackson

Cytogenetic and Genome Research | 04.01.2018

Extrachromosomal circular DNA-based amplification and transmission of herbicide resistance in crop weed Amaranthus palmeri

Dal-Hoe Koo, William T. Molin, Christopher A. Saski, Jiming Jiang, Karthik Putta, Mithila Jugulam, Bernd Friebe & Bikram S. Gill

PNAS | 03.12.2018

Gene Duplication and Aneuploidy Trigger Rapid Evolution of Herbicide Resistance in Common Waterhemp

Dal-Hoe Koo, Mithila Jugulam, Karthik Putta, Ivan B. Cuvaca, Dallas E. Peterson, Randall S. Currie, Bernd Friebe & Bikram S. Gill

Plant Physiology | 01.02.2018

Development of a complete set of wheat–barley group-7 Robertsonian translocation chromosomes conferring an increased content of β-glucan

Tatiana V. Danilova, Bernd Friebe, Bikram S. Gill, Jesse Poland & Eric Jackson

Theoretical and Applied Genetics | 11.10.2017

Recurrent establishment of de novo centromeres in the pericentromeric region of maize chromosome

Hainan Zhao, Zixian Zeng, Dal-Hoe Koo, Bikram S. Gill, James A. Birchler & Jiming Jiang

Chromosome Research | 08.22.2017

Major structural genomic alterations can be associated with hybrid speciation in Aegilops markgrafii (Triticeae)

Tatiana V. Danilova, Alina R. Akhunova, Eduard D. Akhunov, Bernd Friebe & Bikram S. Gill

The Plant Journal | 08.04.2017

Homoeologous recombination-based transfer and molecular cytogenetic mapping of a wheat streak mosaic virus and Triticum mosaic virus resistance gene Wsm3 from Thinopyrum intermedium to wheat

Tatiana V. Danilova, Guorong Zhang, Wenxuan Liu, Bernd Friebe & Bikram S. Gill

Theoretical Applied Genetics | 03.01.2017

Homoeologous recombination-based transfer and molecular cytogenetic mapping of powdery mildew-resistant gene Pm57 from Aegilops searsii into wheat

Wenxuan Liu, Dal-Hoe Koo, Qing Xia, Chunxin Li, Fuqiang Bai, Yuli Song, Bernd Friebe & Bikram S. Gill

Theoretical and Applied Genetics | 01.23.2017

Homoeologous recombination in the presence of Ph1 gene in wheat

Dal-Hoe Koo, Wenxuan Liu, Bernd Friebe & Bikram S. Gill

Chromosoma | 12.01.2016

Wheat Fhb1 encodes a chimeric lectin with agglutinin domains and a pore-forming toxin-like domain conferring resistance to Fusarium head blight

Nidhi Rawat, Michael O Pumphrey, Sixin Liu, Xiaofei Zhang, Vijay K Tiwari, Kaori Ando, Harold N. Trick, William W. Bockus, Eduard Akhunov, James A. Anderson & Bikram S. Gill

Nature Genetics | 10.24.2016

Development of the first consensus genetic map of intermediate wheatgrass (Thinopyrum intermedium) using genotyping-by-sequencing

Traci Kantarski, Steve Larson, Xiaofei Zhang, Lee DeHaan, Justin Borevitz, James Anderson & Jesse Poland

Theoretical and Applied Genetics | 10.13.2016